Yes, I would like to receive updates and offers from the Feld Entertainment family of brands. Minecraft Forge 1.15.2/1.14.4 is a modding API (Application Programming Interface), which makes it easier to create mods, and also make sure mods are compatible with each other. It is the foundation of the majority of current mods of Minecraft. Developers can customise Mincecraft based on it. With Minecraft Forge, Minecraft is limitless.
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IntroductionThis repository contains a selection of packages mirroring the CircuitPython APIon hosts running micropython. Working code exists to emulate the CircuitPython packages;. board - breakout-specific pin identities. microcontroller - chip-specific pin identities. analogio - analog input/output pins, using pin identities from board+microcontroller packages.
digitalio - digital input/output pins, using pin identities from board+microcontroller packages. bitbangio - software-driven interfaces for I2C, SPI. busio - hardware-driven interfaces for I2C, SPI, UART. time.
substitute functions monkey-patched to time module. DependenciesThe Micropython compatibility layers described above are intended to provide a CircuitPython-like API for devices whichare running CPython or Micropython. Since corresponding packages should be built-in to any standardCircuitPython image, they have no value on a device already running CircuitPython and would likely conflict in unhappy ways.The test suites in the test/src folder under testing.universal are by designintended to run on either CircuitPython or Micropython+compatibility layer to prove conformance. Building locally Sphinx documentationSphinx is used to build the documentation based on rST files and comments in the code. First,install dependencies (feel free to reuse the virtual environment from above): python3 -m venv.envsource.env/bin/activatepip install Sphinx sphinx-rtd-themeNow, once you have the virtual environment activated: cd docssphinx-build -E -W -b html. build/htmlThis will output the documentation to docs/build/html.
Open the index.html in your browser toview them. It will also (due to -W) error out on any warning like Travis will.
This is a good way tolocally verify it will pass.
The terrifying dinosaur corn genomeAmblin Entertainment and Legendary Pictures, the studios that produced Jurrasic World, try to inject genome science into the movie. Unfortunately, since we don't quite know how to construct viable genomes of extinct species, much less grow the creatures themselves, we don't know whether the depiction of the science is right.
Perhaps theirs is exactly what a genome lab would look like in a dino-building facility.But, we can get fewer things wrong. In the companion website, a Circos image is used to illustrate a triceratops genome.Unfortunately, this is an image of the B73 Maize reference genome (B73 RefGenv1), as published in Nature'sSchnable PS Ware D Fulton RS et al. 2009 Science 326 ( 5956) 1112-1115. Using News Reports to Track Wildlife Black MarketsINTERNATIONAL BLACK market in wildlife—alive or dead—is notoriously difficult to track. Hunters and smugglers don’t report their take for the same reasons that drug dealers don’t report profits to the IRS.
But if you could actually track those networks, maybe you could do something about them. That’s what sent Nikkita Patel, a veterinary epidemiologist at the University of Pennsylvania, to an unusual source of data on the illegal wildlife trade: the news.—The image shows the illegal global rhinoceros trade network before (top) and after (bottom) a hypothetical targeted disruption. Created with. Circos deals with 8 Gb Rye GenomeBecause of its large 8 Gb genome, the genomic analysis of rye has lagged behind other cereals.To address this, Martis et al. Eastablished a linear gene order model for 72% of the rye genes based on synteny information from rice, sorghum and B.
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Distachyon.Although it appears that six major translocations shaped the modern rye genome, highly dissimilar conserved syntenic gene content, gene sequence diversity signatures, and phylogenetic networks were found for individual rye syntenic blocks.Martis MM, Zhou R, Haseneyer G et al. 2013 Plant Cell. Circos Tracks CO 2 EmissionsKanemoto et al. Report on the disturbing trend of emissions leakage, in which developing countries are displacing emissions intensive production offshore.The report confirms previous findings that adjusting for trade, developed countries emissions have increased, not decreased.
A connection is made to the kind of emissions displacement that has already occurred for air pollution, where despite aggressive legislation in major emitters total global air pollution emissions have increased.The conclusion warns us that 'if regulatory policies do not account for embodied imports, global emissions are likely to rise even if developed countries emitters enforce strong national emissions targets.' Kanemoto K, Moran D, Lenzen M et al. 2013 Global Environmental Change. Circos Round — Lotus SacredThe pleasing roundness of Circos is used by Ming et al. To depict the Sacred Lotus genome in the publication 'Genome of the long-living sacred lotus ( Nelumbo nucifera Gaertn.).The Sacred lotus has religious significance in both Buddhism and Hinduism and has been used as a food and herbal medicine product in Asia for over 7,000 years.
Its seeds have exceptional longevity, remaining viable for as long as 1,300 years.The plant is known for its exceptional water repellency, known as the lotus effect. The latter property is due to the nanoscopic closely packed protuberances of its self-cleaning leaf surface, which have been adapted for the manufacture of a self-cleaning industrial paint, Lotusan.Ming R, Vanburen R, Liu Y et al. 2013 Genome Biol 14: R41. Circos Interchange Diagrams — Networks and FlowZeng et al. Introduce a new type of visualization based on Circos, the, in their paper.The design is applied to displaying movement data, such as daily trips made by passengers in a city. By incorporating interactivity, this visualization method is helpful to understand interchange patterns at different spatial (between trains, between cities) and time scales (different times of day).Circos has been used for urban planning before. The town of in Spain has used Circos to communicate their.Zeng W, Fu C-W, Arisona SM et al.
2013 Computer Graphics Forum 32: 271-280. Circos on the Cover Of Nature's Asian Journal of AndrologyThe May 2013 Special Issue of Asian Journal of Andrology presents the outcomes from the Sixth Annual Forum on Prostate Disease (6th FPD), which was held on June 8-9, 2012 in Shanghai, China source:. The cover art for the issue shows a Circos plot of 90 significantly recurrent molecular alterations in prostate cancer from an analysis of 372 prostate tumors discussed in the.The review summarizes the current state of understanding of prostate cancer, 'including the sentinel role of copy number variation, the growing spectrum of oncogenic fusion genes, the potential influence of chromothripsis, and breakthroughs in defining mutation-associated subtypes. Increasing evidence suggests that genomic lesions frequently converge on specific cellular functions and signalling pathways, yet recurrent gene aberration appears rare'.Wyatt AW, Mo F, Wang Y et al. 2013 Asian J Androl 15: 301-308.
What is Circos? Circular visualizationCircos is a software package for. It visualizes data in a — this makes Circos ideal for exploring relationships between objects or positions. There are why a circular layout is advantageous, not the least being the fact that it is attractive.Circos is ideal for creating publication-quality infographics and illustrations with a high, richly layered data and pleasant symmetries. You have fine control each element in the figure to tailor its focus points and detail to your audience.
▴Imagescreated with Circos, illustrating links, ribbons, tiles and a varietyof 2D data tracks. If it's round, Circos can probably do it.Circos is flexible.
Although originally designed for, it can create figures from —from to to. If you have data that describes relationships or multi-layered annotations of one or more scales, Circos is for you.Circos can be automated. It is controlled by plain-text configuration files, which makes it easily incorporated into data acquisition, analysis and reporting pipelines (a data pipeline is a multi-step process in which data is analyzed by multiple and typically independent tools, each passing their output as the input to the next step).Popular and PrettyHave you noticed how beautifully everyday science and technology is rendered in movies?
Information is delivered seamlessly from interfaces oozing with style and function. While others complain that the movie doesn't get the science facts right, I contrarily note that it doesn't get the science look right. No busy scientist is able to make such great design and type face choices!
▴Experiments in movies are beautiful.Sadly, the reality of cutting-edge science reveals a grimmer picture, replete with incomprehensible figures, illegible color combination and awkward type faces. This is due in large part by the fact that the people in charge of the science are too busy with the science to worry about figures.
It is therefore important for designers, artists and other visual creatives to continue providing working scientists with tools that are useful, effective. One example of this kind of knowledge transfer are. The scientists will thank you, the press will thank you, as will the public and policy makers, who are ultimately asked to digest the results.Circos attempts to bring a different aesthetic to science and strike a balance between flexibility and ease-of-use. Circos makes no assumptions about your data, uses extremely simple input data format, and makes image creation and customization easy. It's helping to make science look better, one figure at a time.Circos has appeared in many publications, both scientific and general. It has changed the way the scientific community visualizes genomic alterations (changes in a genome over time, or differences between two or more genomes). One timely application of this approach is creating effective figures showing how cancer genomes differ from healthy ones (e.g.
).The biological scientific community has adopted Circos wholeheartedly. By now, Circos has appeared on the the covers of both and publications, which are the world's top scientific journals.publication-logosMy images created with Circos have appeared in a variety of publications., and.In genomics, scientific journals like, and others have published papers that used Circos images. ▴A sampling of published images from New York Times, Conde Nast Portfolio, American Scientist, Nature and various books.Scriptable and Automatable - Get Your.NIX Geek OnCreation of images is controlled through a plain-text configuration file — there is no interactive user interface.
This approach to configuration should be very famililar to you if you have UNIX experience.If you're used to pointing (and clicking), you're in for both a surprise and a treat and, initially, perhaps for a little bit of frustration. It's ok, don't worry. Although Circos' barrier to entry is higher than most applications you may have used, once you become comfortable with Circos and gain experience in its use, you will see benefits from Circos' approach and will be able to convert the time you invested into learning Circos into great-looking figures.Image creation can be completely automated — you can writescripts to generate both data and configuration file and make a callto Circos to generate the image — making Circos suitable forincorporation into data analysis pipelines and applications. In thisway, Circos is similar to. Dynamic Formatting with Run-Time RulesMost aspects of the output image can be adjusted using dynamicrules, which format elements of the figure based on data values. Thisfeature allows a variety of images to be created without changing theinput data or configuration file.
▴By using run-time rules, defined in the configuration files, you can control how elements of the figure are drawn based on data values.This feature is extremely powerful and uniquely suited for visual analytics. For example, for a given data track (e.g. Histogram) you can ask that all bins with values 10 are colored blue, or more generally you can color the bins by value using your own color scheme. Rules can be chained. For example, later in the rule chain, you can ask that any blue bins that fall within a specific position range be hidden.
Who should care?If you are a researcher, analyst, data geek, art director, illustrator or visual artist who is seeking to explore or communicate a data set, or to think outside the box (and inside a circle), Circos is worth looking into.What is it for?Circos can be used to display any kind of information. It's particularly suitable for layering different data sets to create highly informative infographics with texture and visual appeal. Circos can make low-resolution bitmaps, suitable for basic web-based reporting, as well as publication-quality images with a lot of bling (but I mean legible, clear and informative bling!). Only for genomics? No!Data is data. Circos is flexible.
There is nothing about Circos that is specific to genomics — it just happens that I work in genomics and therefore the tool has been applied to this field.Circos can illustrate genomic rearrangements, where a relationship between two elements (genomic positions) represents a structural fusion. Circos can also visually represent the flow of refugees, where a relationship between two elements (countries) represents the extent of ingress and egress. ▴Circos is suitable for showing any kind of relationships among data. Shown here are car purchase trends, chemical reactivity, and dating trends, among others.To name a few, Circos has been used to visualize customer flow in the auto industry, volume of courier shipments, database schemas, and presidential debates.How is it different?My purpose in creating Circos was not as much to create yet another way to draw data, but rather to create a tool which can help make data look beautiful.
The compactness of the is inherently more appealing than a linear layout. Although some figures are ideally suited for a square layout, most of the time a circular figure can match or exceed efficiency in delivering information, have a higher ink-to-data ratio and sit more tightly on the page.It is easy to plot, format and layer your data with Circos. A largevariety of plot and feature parameters are customizable, helping youmake the image that best communicates your data. You supply your datato Circos as plain-text files, tell Circos what you wantplotted using the configuration file, and then create the image. ▴Each panel shows the sequence similarity between one dog chromosome, placed at the bottom half of the circle, with the entire human genome, placed at the top. These data were combined into a single figure which appeared on the. The image accompanies the article by Elaine Ostrander.Useful to you?How do you know whether Circos can be useful to you?
First, look at and see what others are doing with Circos (for other images, see ). For examples of Circos' capabilities, see the. These image sets will give you an idea of the types of data visualizations that Circos can create. Brief HistoryCircos was originally conceived for visualizing genomic data suchas alignments and structural variation.
Over time, support was addedfor 2D data tracks such as line, scatter, heatmap and histogram plots.As Circos' popularity grew — sparked by a — it started to be used forvisualizing other data, not just genomics.Future of CircosI work on Circos in a passive-aggressive manner - sometimes passive sometimes aggressive. I welcome your comments.Visit the or contact if you would like to report a bug, request a feature or share the ways in which you are using, or hope to use, Circos.License and UseCircos is free software, licensed under.Circos is written in Perl, can be deployed on any operating systemfor which Perl is available (e.g. Windows, Mac OS X, Linux and otherUNIX flavours) and produces bitmap (PNG) and vector (SVG) images usingplain text configuration and input files.
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